Hotels in Mission Bay, CA: Compare 10+ Sites & Save

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775 Best Hotels in Mission Bay (Starting from $49)

LUMA Hotel San Francisco
LUMA Hotel San Francisco
Hotel
San Francisco, CA, USA
0.4k from Mission Bay center

Luxury, Cheap, Accommodations, Parking, 4-star, Lodgings, Places to stay, Accessible hotels

9.1

Superb

1354 reviews

$319
Average price / night
Check Availability
Hotel Via
Hotel Via
Hotel
Mission Bay, San Francisco, California, USA
0.9k from Mission Bay center

Accommodations, Parking, 4-star, Lodgings, Places to stay, Accessible hotels

8.5

Very Good

635 reviews

$352
Average price / night
Check Availability
Hyatt Place San Francisco Downtown
Hyatt Place San Francisco Downtown
Hotel
701 3rd St, San Francisco, CA, 94107, United States
0.8k from Mission Bay center

AC, Bar, Breakfast Available, Elevator, Frontdesk 24 Hour, Housekeeping, Internet, No Smoking, Outdoor Space

9.4

Superb

2086 reviews

$218
Average price / night
Check Availability
The Utah Inn
The Utah Inn
Hotel
Mission Bay, San Francisco, California, USA
1.1k from Mission Bay center

B&bs, Accommodations, Inns, Lodgings, Places to stay

6.3

Good

415 reviews

$85
Average price / night
Check Availability
Bay Bridge Inn San Francisco
Bay Bridge Inn San Francisco
Hotel
Mission Bay, San Francisco, California, USA
1.3k from Mission Bay center

Accommodations, Motels, Parking, 3-star, Lodgings, Places to stay, Accessible hotels

6.6

Good

429 reviews

$144
Average price / night
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Bay Bridge Inn
Bay Bridge Inn
Hotel
966 Harrison St, San Francisco, CA, 94107, United States
1.3k from Mission Bay center

AC, Free Parking, Frontdesk 24 Hour, Housekeeping, Internet, Microwave, Room Service, TV

7.6

Good

1005 reviews

$161
Average price / night
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Canopy by Hilton San Francisco SoMa
Canopy by Hilton San Francisco SoMa
Hotel
San Francisco, CA, USA
1.6k from Mission Bay center

Cheap, Accommodations, Parking, Pet-friendly, 4-star, Lodgings, Places to stay, Accessible hotels

8.4

Very Good

205 reviews

$209
Average price / night
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Premium Queen Room in Motel Located in SOMA, Free Parking,15 Min Walk to Moscone
Premium Queen Room in Motel Located in SOMA, Free Parking,15 Min Walk to Moscone
Hotel
San Francisco, CA, 94103, United States
1.4k from Mission Bay center

AC, Free Parking, Heater, Internet, Microwave, No Smoking, Patio, TV

8.6

Fabulous

19 reviews

$165
Average price / night
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San Francisco Inn
San Francisco Inn
Hotel
San Francisco, CA, USA
1.7k from Mission Bay center

Accommodations, Parking, Lodgings, Places to stay

6.6

Good

243 reviews

$116
Average price / night
Check Availability
InterContinental San Francisco by IHG
InterContinental San Francisco by IHG
Hotel
San Francisco, CA, USA
1.7k from Mission Bay center

Accommodations, Pools, Parking, Romantic, Boutique, Pet-friendly, 4-star, Lodgings, Hot tubs

8.7

Fabulous

926 reviews

$222
Average price / night
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Axiom SF: Tech-Savvy Boutique Hotel with Modern Charm in Union Square
Axiom SF: Tech-Savvy Boutique Hotel with Modern Charm in Union Square
Hotel
San Francisco, CA, 94102, United States
1.7k from Mission Bay center

AC, Breakfast Available, Elevator, Fitness Equipment, Heater, Internet, No Smoking, TV

New to Booking
$284
Average price / night
Check Availability
The Clancy, Autograph Collection
The Clancy, Autograph Collection
Hotel
San Francisco, CA, USA
1.7k from Mission Bay center

Accommodations, Parking, Romantic, Pet-friendly, 4-star, Lodgings, Places to stay, Family, Accessible hotels

8.6

Fabulous

680 reviews

$256
Average price / night
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Signature San Francisco
Signature San Francisco
Hotel
San Francisco, CA, USA
1.7k from Mission Bay center

B&bs, Accommodations, Parking, Inns, Lodgings, Places to stay, Family, Accessible hotels

7.0

Good

587 reviews

$199
Average price / night
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City Center Inn & Suites
City Center Inn & Suites
Hotel
240 7th Street, San Francisco, CA, 94103, United States
1.7k from Mission Bay center

AC, Breakfast Included, Business Services, Free Parking, Frontdesk 24 Hour, Heater, Housekeeping, Internet, Microwave

7.2

Good

977 reviews

$137
Average price / night
Check Availability
City Center Inn and Suites
City Center Inn and Suites
Hotel
San Francisco, CA, USA
1.7k from Mission Bay center

Accommodations, Parking, Lodgings, Places to stay

7.1

Good

1078 reviews

$134
Average price / night
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Inn on Folsom
Inn on Folsom
Hotel
San Francisco, CA, USA
1.7k from Mission Bay center

B&bs, Accommodations, Inns, Lodgings, Places to stay

6.7

Good

59 reviews

$96
Average price / night
Check Availability
W San Francisco
W San Francisco
Hotel
San Francisco, CA, USA
1.8k from Mission Bay center

Accommodations, Parking, Romantic, Boutique, Pet-friendly, 4-star, Lodgings, Places to stay, Family

8.6

Fabulous

404 reviews

$229
Average price / night
Check Availability
 The Clancy, Autograph Collection by Marriott
The Clancy, Autograph Collection by Marriott
Hotel
299 2nd St, San Francisco, CA, 94105, United States
1.7k from Mission Bay center

AC, Bar, Breakfast Available, Business Services, Crib, Elevator, Fitness Equipment, Frontdesk 24 Hour, Heater

9.2

Superb

1004 reviews

$262
Average price / night
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Hampton Inn San Francisco Downtown/Convention Center
Hampton Inn San Francisco Downtown/Convention Center
Hotel
San Francisco, CA, USA
1.9k from Mission Bay center

Accommodations, Parking, Pet-friendly, 3-star, Lodgings, Places to stay, Accessible hotels

7.2

Good

932 reviews

$160
Average price / night
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Hotel Fiona
Hotel Fiona
Hotel
San Francisco, CA, USA
1.9k from Mission Bay center

Cheap, Accommodations, Pools, Parking, Boutique, 3-star, Lodgings, Places to stay, Accessible hotels

7.9

Good

192 reviews

$173
Average price / night
Check Availability
SoMa House
SoMa House
Hotel
San Francisco, CA, USA
1.9k from Mission Bay center

Accommodations, Pools, Parking, Boutique, 3-star, Lodgings, Places to stay, Accessible hotels

6.9

Good

134 reviews

$127
Average price / night
Check Availability
The Pickwick Hotel San Francisco
The Pickwick Hotel San Francisco
Hotel
San Francisco, CA, USA
1.9k from Mission Bay center

Accommodations, Parking, 3-star, Lodgings, Places to stay, Accessible hotels

7.6

Good

2200 reviews

$139
Average price / night
Check Availability
The St. Regis San Francisco
The St. Regis San Francisco
Hotel
San Francisco, CA, USA
1.9k from Mission Bay center

Accommodations, Pools, Parking, Romantic, Boutique, Pet-friendly, 5-star, Lodgings, Places to stay

9.0

Fabulous

80 reviews

$509
Average price / night
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San Francisco Marriott Marquis Union Square
San Francisco Marriott Marquis Union Square
Hotel
San Francisco, CA, USA
2.0k from Mission Bay center

Accommodations, Parking, Romantic, Marriott , Pet-friendly, 4-star, Lodgings, Places to stay, Family

8.2

Very Good

679 reviews

$182
Average price / night
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Hotel Zetta San Francisco
Hotel Zetta San Francisco
Hotel
San Francisco, CA, USA
2.0k from Mission Bay center

Accommodations, Parking, Romantic, Boutique, Pet-friendly, 4-star, Lodgings, Places to stay, Family

7.8

Good

305 reviews

$171
Average price / night
Check Availability
Hotel Garrett
Hotel Garrett
Hotel
San Francisco, CA, USA
2.0k from Mission Bay center

Accommodations, Parking, Boutique, 3-star, Lodgings, Places to stay, Accessible hotels

7.2

Good

373 reviews

$109
Average price / night
Check Availability
Winsor Hotel
Winsor Hotel
Hotel
San Francisco, CA, USA
2.0k from Mission Bay center

Accommodations, Lodgings, Places to stay

6.6

Good

470 reviews

$49
Average price / night
Check Availability

Pro Tip:
VacationByOwnerRentals aggregates the best inventory from leading travel sites, including Booking.com, Agoda.com, Expedia.com, Vrbo.com, and Airbnb.com. Use our Advanced Filters to compare verified homes, villas, cabins, condos, cottages, vacation rentals, hotels, and eco-friendly stays. Our goal is to help you find the absolute best Hotels in Mission Bay.

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Mission Bay Hotels on the Map

Frequently Asked Questions

You can explore 775 verified hotels in Mission Bay. These include a range of options from luxury resorts and boutique hotels to budget-friendly accommodations suitable for different travel styles.

Hotel prices in Mission Bay vary depending on the season, location, and property type. Rates typically start from around $49 per night, with higher prices for premium hotels, central locations, or peak travel dates.

Most hotels in Mission Bay include amenities such as Guest Services, Accessibility, and Internet. Additional features like breakfast, parking, or resort facilities may vary by property, so it’s helpful to review the details before booking.

You can identify top-rated hotels in Mission Bay by sorting listings based on guest ratings and reviews. Looking at recent feedback, overall scores, and review volume can help you find properties that consistently deliver a high-quality experience.

For popular travel periods or busy locations, booking 30 to 60 days in advance is generally recommended to secure preferred options. During quieter periods, you may find more flexibility and availability closer to your travel dates.

Yes, some hotels in Mission Bay welcome pets. Currently, 24 listings allow pets, although policies may vary. It’s a good idea to review any pet-related rules before booking.

Many hotels in Mission Bay offer flexible or refundable booking options. Checking the cancellation policy before confirming your reservation can help you choose a rate that suits your travel plans.